Immune responses depend on specific interactions between T cell receptors (TCRs) and peptides presented by antigen-presenting cells (APCs). The vast diversity of the TCR repertoire makes accurate prediction of TCR-antigen binding specificity highly challenging. Here, we present a lightweight, masked language model, tcrLM, to address this problem. We pretrain tcrLM on a large-scale TCR CDR3 sequence dataset and use the pretrained encoder to extract informative features for pTCR binding prediction. tcrLM achieves competitive performance on hold-out and external test sets and shows comparatively robust zero-shot generalization relative to several baselines on a large, unseen-COVID-19 peptide set. The model effectively captures biochemical properties and positional preferences of amino acids within TCR sequences. In an exploratory melanoma cohort, the predicted TCR-neoantigen binding scores correlate with immunotherapy response and clinical outcomes. These results highlight the potential of tcrLM for advancing immunotherapy and personalized medicine.
Yu et al. (Sun,) studied this question.
Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context: