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As long as the outcome is included in the imputation model, there are very small performance differences between the possible multiple imputation approaches: no outcome imputation, imputation or imputation and deletion. All informative covariates, even with very high levels of missingness, should be included in the multiple imputation model. Multiple imputation offers some protection against a simple missing not at random mechanism.
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Evangelos Kontopantelis
Ian R. White
Matthew Sperrin
BMC Medical Research Methodology
SHILAP Revista de lepidopterología
University of Manchester
MRC Biostatistics Unit
Manchester Academic Health Science Centre
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Kontopantelis et al. (Mon,) studied this question.
www.synapsesocial.com/papers/69db23570d8d6ef495a3d033 — DOI: https://doi.org/10.1186/s12874-016-0281-5