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April 24, 2026RHAZES: Green and Applied Chemistry0 citationsOpen Access

Machine Learning Modeling of Olfactory Thresholds of Pyrazine Derivatives Using Cheminformatics Descriptors

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MOMohamed OuabaneKZKhadija ZakiCSchakib Sekkate

Key Points

  • The aim is to develop a machine learning model to predict olfactory thresholds of substituted 1,4-pyrazine derivatives based on their molecular structures.
  • Analyzed 78 pyrazine derivatives using cheminformatics descriptors and SMILES representations.
  • Evaluated multiple machine learning algorithms including Random Forest and Extra Trees for predictive accuracy.
  • Performed descriptor preprocessing and dimensionality reduction before modeling.
  • Extra Trees algorithm achieved the highest external accuracy with an R² value of 0.814.
  • Random Forest and Bagging followed with R² values of 0.802 and 0.784, respectively.
  • Models displayed strong generalization capability, indicated by low root mean square error (RMSE) values.

Abstract

Pyrazine derivatives represent an important class of heterocyclic compounds widely used for their potent odor properties and their numerous applications in industry and perfumery. However, predicting their olfactory thresholds remains challenging due to the complex relationship between molecular structure and sensory perception. In this study, a machine learning strategy was developed to quantitatively model the structure-odor relationships of 78 substituted 1,4-pyrazine derivatives using cheminformatics descriptors. Molecular features were calculated from SMILES representations of the molecules using RDKit and Mordred, followed by descriptor preprocessing and dimensionality reduction. Several algorithms were evaluated, including Decision Tree, Random Forest, Gradient Boosting, Bagging, Extra Trees, XGBoost, LightGBM, and Histogram-Based Gradient Boosting. In particular, Extra Trees, Random Forest, and Bagging achieved the highest external accuracies with R² values of 0.814, 0.802, and 0.784 and low RMSE values of 0.816, 0.841, and 0.878, respectively, demonstrating strong generalization ability and reduced overfitting. Plots comparing predicted and experimental results confirmed the robustness of these models. Overall, this work highlights the effectiveness of machine learning techniques for modeling olfactory properties and provides a practical computational framework for the prediction and virtual screening of odor molecules, thereby promoting more efficient development of flavors and fragrances.

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Cite This Study

Ouabane et al. (2026) studied this question.

synapsesocial.com/papers/69eb0b50553a5433e34b5163https://doi.org/10.48419/imist.prsm/rhazes-v24.66546
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