changegffgeneid. pl-A script used to change annotation gene ID in structure annotations' gff file. gvcfₐlefreq. py-A script used to calculate the occurrence of genotypes in vcf. makeagpfromscaffold. change. pl-A script used to split scaffold sequence into contigs. mergeₗoc. py-A script used to merge vcf according to position file. mergeᵥcf. py-A script used to merge vcf whose corresponding genomes are evenly cut by length. newᵥcfgeno. py-This script is used to convert the vcf to a genotype file. splitbigChrforGWAs. py-This script is used to split long chromosomes in vcf file.
Rong Liu (Wed,) studied this question.