January 7, 2015Open Access

Performance of genetic programming optimised Bowtie2 on genome comparison and analytic testing (GCAT) benchmarks

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Resumen

On both singled ended and paired-end synthetic next generation DNA sequence GCAT benchmarks Bowtie2GP runs up to 45% faster than Bowtie2. The lost in accuracy can be as little as 0.2-0.5% but up to 2.5% for longer sequences.

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William B. Langdon (Wed,) studied this question.

synapsesocial.com/papers/69d7d7dd05ee2ba81dbee4c0 https://doi.org/https://doi.org/10.1186/s13040-014-0034-0

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