April 4, 2018Open Access

SnapperDB: a database solution for routine sequencing analysis of bacterial isolates

Puntos clave

Los puntos clave no están disponibles para este artículo en este momento.

Resumen

SnapperDB is implemented as a python application under the open source BSD license. All code and user guides are available at https: //github. com/phe-bioinformatics/snapperdb. Reference genomes and SnapperDB configs are available at https: //github. com/phe-bioinformatics/snapperdbᵣeferences.

Leer artículo completoexternamente

Me gusta

Guardar

Ver artículo completo

Cite This Study

Dallman et al. (Wed,) studied this question.

synapsesocial.com/papers/69d8f40fade63f05b9bedf5e https://doi.org/https://doi.org/10.1093/bioinformatics/bty212

Also Consider

Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context:

1Fast gapped-read alignment with Bowtie 22012 · 60,906 citations
2An outbreak of Shiga toxin-producing <i>Escherichia coli</i> serogroup O157 linked to a lamb-feeding event2016 · 25 citations
3Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins2014 · 2,868 citations
4Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study2015 · 334 citations
5The Sequence Alignment/Map format and SAMtools2009 · 67,343 citations

Me gusta

Guardar

Ver artículo completo