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microViz is an R package for the statistical analysis and visualization of microbiota data. This package extends the functionality of popular microbial ecosystem data analysis R packages, including phyloseq microViz provides a selection of powerful additions to the toolbox of researchers already familiar with phyloseq and microbiome, as well as assisting researchers with less R programming experience to independently explore and analyse their data and to generate publication-ready figures.
Barnett et al. (Sat,) studied this question.