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May 1, 2008Cold Spring Harbor Protocols2,145 citations

Hematoxylin and Eosin Staining of Tissue and Cell Sections

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AFAndrew H. FischerKJKenneth A. JacobsonJRJack Rose

Key Points

  • To describe the standard protocol and morphological principles of hematoxylin and eosin (H&E) staining in tissue and cell sections for diagnostic and research applications.
  • Outlines histological staining procedures applying hematoxylin for nucleic acid visualization and eosin for cytoplasmic and extracellular protein counterstaining across fixed specimen sections.
  • Evaluates compatibility with complementary histological methods, including immunohistochemistry and immunofluorescence.
  • Hematoxylin selectively stains cell nuclei and heterochromatin deep blue-purple, while eosin non-specifically stains the cytoplasm, nucleoli, and extracellular matrix varying shades of pink.
  • The staining pattern distinguishes sub-cellular features—including polyribosome-rich blue cytoplasm and unstained Golgi zones—enabling cellular and cancer-type diagnostic differentiation.
  • The method provides a reliable morphological counterstain for colorimetric enzyme-substrate assays, though it remains incompatible with direct immunofluorescence.

Abstract

INTRODUCTIONHematoxylin and eosin (H&E) stains have been used for at least a century and are still essential for recognizing various tissue types and the morphologic changes that form the basis of contemporary cancer diagnosis. The stain has been unchanged for many years because it works well with a variety of fixatives and displays a broad range of cytoplasmic, nuclear, and extracellular matrix features. Hematoxylin has a deep blue-purple color and stains nucleic acids by a complex, incompletely understood reaction. Eosin is pink and stains proteins nonspecifically. In a typical tissue, nuclei are stained blue, whereas the cytoplasm and extracellular matrix have varying degrees of pink staining. Well-fixed cells show considerable intranuclear detail. Nuclei show varying cell-type- and cancer-type-specific patterns of condensation of heterochromatin (hematoxylin staining) that are diagnostically very important. Nucleoli stain with eosin. If abundant polyribosomes are present, the cytoplasm will have a distinct blue cast. The Golgi zone can be tentatively identified by the absence of staining in a region next to the nucleus. Thus, the stain discloses abundant structural information, with specific functional implications. A limitation of hematoxylin staining is that it is incompatible with immunofluorescence. It is useful, however, to stain one serial paraffin section from a tissue in which immunofluorescence will be performed. Hematoxylin, generally without eosin, is useful as a counterstain for many immunohistochemical or hybridization procedures that use colorimetric substrates (such as alkaline phosphatase or peroxidase). This protocol describes H&E staining of tissue and cell sections.

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Cite This Study

Fischer et al. (2008) studied this question.

synapsesocial.com/papers/69d6c410fca0359822aa85c3https://doi.org/10.1101/pdb.prot4986
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