PulseExploreJournal ClubDebatesTrendingResearchersJournals
Instagram
HomeExploreJournal ClubTrending
Synapse
⌘+K
Synapse
June 3, 20260 citationsOpen Access

Deep Learning (nnU-Net)-Based Segmentation of Primary HPV-Positive OPSCC: Contrast-Enhanced T1-Weighted Fat-Suppressed Versus Non-Contrast-Enhanced T2-Weighted Fat-Suppressed MRI (Paired Single-Center Study)

View Full Paper
VZViktoriia ZarovniaevaRSRamkumar Rajabathar Babu Jai ShankerASAmogh Shetty

Key Points

  • To evaluate the effectiveness of contrast-enhanced versus T2-weighted MRI sequences for deep learning-based tumor segmentation in HPV-positive OPSCC.
  • Retrospective analysis of pre-treatment MRI from 39 patients with paired sequences.
  • Manual segmentation of OPSCC primary tumors served as ground truth for evaluation.
  • Comparison of Dice scores and other metrics between sequence configurations using Wilcoxon signed-rank test.
  • Median Dice scores showed no significant difference among configurations (0.63 for CE + T2, 0.60 for T2-only, 0.55 for CE-only).
  • Median Surface-Dice@2mm was highest for combined configuration (0.62).
  • Qualitative analysis revealed no performance difference in acceptability ratings (p ≥ 0.35) for sequence configurations.

Abstract

Background/Objectives: While deep learning-based AI algorithms have been shown to perform well for OPSCC tumor segmentation, the relative value of contrast-enhanced versus T2-weighted sequences for automated segmentation has not been systematically evaluated. In this study, we compared the sequence-specific deep learning performance on contrast-enhanced T1-weighted fat-suppressed and T2-weighted fat-suppressed MRI in HPV-positive OPSCC. Methods: Pretreatment MRI from 39 patients with paired sequences from a single center were retrospectively analyzed. OPSCC primary tumors were manually segmented using both sequences, which served as the ground truth. Three sequence-specific configurations were evaluated: contrast-enhanced (CE), T2-only, and combined CE + T2. Quantitative evaluation was carried out on aggregated out-of-fold predictions using Dice score (primary), Surface-Dice@2mm (secondary), and other boundary and volumetric metrics, and paired comparisons (combined vs. T2-only; CE-only vs. T2-only) were performed using an exact Wilcoxon signed-rank test. Qualitative evaluation was performed on 4-point ordinal acceptability ratings recorded using a blind reader study, and the ratings were compared using the exact Wilcoxon signed-rank test (pairwise) and dichotomized acceptability using the McNemar test. Results: Median Dice was comparable across configurations (0.63 for CE + T2, 0.60 for T2-only, and 0.55 for CE-only). Median Surface-Dice@2mm was highest for the combined configuration (0.62), followed by CE-only (0.6) and T2-only (0.57). Median ASSD were 2.71, 2.98, and 2.98 mm, and median HD95 were 11.39, 15.0, and 11.3 mm for combined, CE, and T2, respectively. The median GTV differences (−1.31, −1.29, and −1.49 mL for combined, T2, and CE, respectively) showed a slight bias toward under-segmentation across all configurations. No significant differences in Dice scores were observed for combined vs. T2 (p = 0.11) or contrast-enhanced vs. T2-only (p = 0.98). Similarly, qualitative analysis also showed no evidence of performance difference for ratings and acceptability rates across sequence configurations (paired Wilcoxon, p ≥ 0.35; McNemar, p = 1.00). Conclusions: In this single-center study, the segmentation performance using non-contrast sequences was comparable to that using both contrast-enhanced and non-contrast sequences. The drop in performance when the contrast-enhanced sequences were excluded from the combination was not significant. These findings justify multi-center validation to support the feasibility of contrast-sparing automated primary OPSCC segmentation when use of contrast agents is contraindicated.

Ask AI
Helpful
Bookmark
Share
View Full Paper

Cite This Study

Zarovniaeva et al. (2026) studied this question.

synapsesocial.com/papers/6a1fc6f7dee9eb8c0dce7e1ahttps://doi.org/10.6082/y1mw3-5k752
Ask AI
Helpful
Bookmark
Share
View Full Paper