Infectious Disease Research Institute

Recent papers from Infectious Disease Research Institute

1. Spatial transcriptomics of pediatric tuberculosis lymph nodes reveals a conserved hypoxia_SPP1 niche2026
2. Sequential vaccination matures VRC01-class HIV-1 neutralizing antibodies in humans2026
3. pileup-hi: an ultra-high-throughput, customizable alignment pileup program for large datasetsBioinformatics · 2026
4. Entering the Age of Specificity in T Cell ImmunityImmunological Reviews · 2026
5. Phylogenetics Nextstrain automates real-time phylogenetic analysis of open data for endemic and emerging pathogensBioinformatics · 2026
6. Endocrine therapy adherence and 10-year cardiometabolic risk in hormone receptor-positive breast cancerJNCI Cancer Spectrum · 2026
7. Near real-time data on the human neutralizing antibody landscape to influenza virus in summer of 2026 shows antigenic advance of H3N2 subclade K region D mutants and H1N1 D.3.1.1 Sa mutants2026
8. Population-level genomic surveillance of human norovirus using wastewater-based whole-genome sequencingApplied and Environmental Microbiology · 2026
9. Burden and Risk Factors for Severe Respiratory Syncytial Virus Infection Among Pediatric Hematopoietic Cell Transplant RecipientsJournal of the Pediatric Infectious Diseases Society · 2026
10. Ischemic stroke in Peru: a scoping review of trends, outcomes, and evidence gapsFrontiers in Epidemiology · 2026
11. Using mathematical models as a toolbox for designing trials to prevent transmission of infectious diseasesResearch Connections · 2026
12. Novel African Rhinolophus bat ACE2 sequences reveal the determinants of Afro-Eurasian sarbecovirus entryJournal of Virology · 2026
13. Characterization of vaginal lactobacilli from South African women toward the development of a biotherapeutic to optimize the vaginal microbiomeApplied and Environmental Microbiology · 2026
14. Pan-African hybridization of PfSPZ increases antigenic diversity and replicative capacity for malaria vaccine designJCI Insight · 2026
15. The transmission-blocking dynamics of Plasmodium falciparum sexual-stage antibody responses in a six-year cohort of Ugandan children and adultsNature Communications · 2026
16. A single-cell transcriptomic atlas of the periventricular proliferative zone in the late gestation fetal brain in the pigtail macaqueFrontiers in Neuroscience · 2026
17. Geographic expansion, not viral intensification, leads to human dengue outbreaks in Mexico: a 40-year integrated remote sensing and machine learning analysisFrontiers in Public Health · 2026
18. Contrasting Oviposition Preference Despite Limited Chemosensory Receptor Gene Differentiation in Two Cryptic Anopheles SpeciesMolecular Ecology · 2026
19. CaptureBody enables accurate unmixing for spectral flow cytometryCell Reports Methods · 2026
20. MicroRNA-1246 regulates macrophage lipid metabolism and is involved in resistance to human Mycobacterium tuberculosis infection 2259565The Journal of Immunology · 2026