Bioinformatics Institute

Recent papers from Bioinformatics Institute

1. Quantifying Data Reuse in Proteomics Using PRIDE Downloads Statistics and a Semi‐Supervised LLM‐Based FrameworkPROTEOMICS · 2026
2. Quantifying the mechanisms of vaccine-induced serotype replacement in Streptococcus pneumoniae using genome-informed modellingISME Communications · 2026
3. PDBe‐SIFTS: An open‐source tool for Structure Integration with Function, Taxonomy, and Sequences, featuring improved alignment, scoring scheme, and accelerated searchProtein Science · 2026
4. ERGA-BGE genome of Valencia hispanica (Valenciennes, 1826): a critically endangered Iberian toothcarpOpen Research Europe · 2026
5. onsite: An Integrated Framework for Phosphosite Localization and False Localization Rate EstimationJournal of Proteome Research · 2026
6. ERGA-BGE reference genome of the European bladdernut (Staphylea pinnata)Open Research Europe · 2026
7. From Pixels to Discovery: Microscopy Image Analysis in the Age of Artificial IntelligenceAnnual Review of Cell and Developmental Biology · 2026
8. Integrated bioinformatics analysis of chromosomal deletion regions in glioblastoma identifies key genes linked to GABA(A) receptor signalingJournal of Biomolecular Structure and Dynamics · 2026
9. ‘Epidemiology of L egionella: Genome-bAsed Typing’ (el_gato) – a new bioinformatic tool for identifying sequence-based types of Legionella pneumophila from whole-genome sequencing dataMicrobial Genomics · 2026
10. Analysis code — Substrate-associated variation in Ramalina bacteriobiomes and identification of Mucilaginibacter licheni sp. nov. through genome-resolved metagenomics2026
11. Proposed Biosynthesis and Molecular Targets of Manzamine Alkaloids from Acanthostrongylophora ingens (Phylum Porifera: Class Demospongiae)Marine Drugs · 2026
12. Programmatic access to ICTV virus taxonomy through a public ontology APIGigaScience · 2026
13. Octopamine receptors in Drosophila larvae: expression, development, and behaviorFrontiers in Molecular Neuroscience · 2026
14. Computational Prediction of the Severity of Adverse Drug Reactions Caused by Drug–Drug InteractionsPharmaceuticals · 2026
15. A New Recruitable E3 Ligase UHRF1 Supporting Targeted Protein Degradation: A Minimal Azide as a Recruitment LigandAdvanced Science · 2026
16. Consensus Lung Cell Reference: The Collaborative Cross-Consortium and Country Lung Cell Nomenclature Project (C3LCN). An Official American Thoracic Society Workshop ReportAmerican Journal of Respiratory Cell and Molecular Biology · 2026
17. rMAP-Candida: a modular Dockerized WDL/Cromwell workflow for reproducible Candida species typing, assembly-contiguity assessment, antifungal-resistance marker screening, and phylogenomic surveillanceFrontiers in Bioinformatics · 2026
18. Usage and impact of global biodata resourcesBioinformatics Advances · 2026
19. Spatial organisation of tumor-infiltrating B-cells informs immune checkpoint inhibitor response in Claudin 18.2-expressing gastric cancerClinical Cancer Research · 2026
20. Robustness and cross-cohort concordance of developmental regulons in endometrial carcinoma2026