A.P. Ershov Institute of Informatics Systems, Siberian Branch of the Russian Academy of Sciences

Recent papers from A.P. Ershov Institute of Informatics Systems, Siberian Branch of the Russian Academy of Sciences

1. Safe Mutations of Communication ProtocolsJournal of Mathematical Sciences · 2026
2. Transition Systems from Asymmetric Prime Event Structures with Cause-Respecting ReversibilityInternational Journal of Foundations of Computer Science · 2025
3. Information Extraction from Multi-Domain Scientific Documents: Methods and InsightsApplied Sciences · 2025
4. Using the Spin Model Checker for Auto-Tuning High-Performance ProgramsJournal of Mathematical Sciences · 2025
5. NEREL-BIO: a dataset of biomedical abstracts annotated with nested named entitiesBioinformatics · 2023
6. RNAseq profiling of blood from patients with coronary artery disease: Signature of a T cell imbalanceJournal of Molecular and Cellular Cardiology Plus · 2023
7. Transcriptomic Analysis of CRISPR/Cas9-Mediated PARP1-Knockout Cells under the Influence of Topotecan and TDP1 InhibitorInternational Journal of Molecular Sciences · 2023
8. Chromosome-Length Assembly of the Baikal Seal (Pusa sibirica) Genome Reveals a Historically Large Population Prior to Isolation in Lake BaikalGenes · 2023
9. RNAseq analysis of treatment-dependent signaling changes during inflammation in a mouse cutaneous wound healing modelBMC Genomics · 2021
10. RNA sequencing of blood in coronary artery disease: involvement of regulatory T cell imbalanceBMC Medical Genomics · 2021
11. Chromosome-Level Genome Assemblies Expand Capabilities of Genomics for Conservation BiologyGenes · 2021
12. Web Platform for Folklore Research Based on Domain OntologyVestnik NSU Series Information Technologies · 2021
13. Automatic Linking of Terms from Scientific Texts with Knowledge Base EntitiesVestnik NSU Series Information Technologies · 2021
14. Long-term Electronic Archives: Modernization and IntegrationNaučnyj servis v seti internet · 2021
15. Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohortsBMC Medical Genomics · 2020
16. CellCountCV—A Web-Application for Accurate Cell Counting and Automated Batch Processing of Microscopic Images Using Fully Convolutional Neural NetworksSensors · 2020
17. Argumentation Modeling in Popular Science Discourse Using OntologiesOntology of Designing · 2019
18. CellCountCV – a web-application for accurate cell counting and automated batch processing of microscopy images using fully-convolutional neural networks2019
19. OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegansPhilosophical Transactions of the Royal Society B Biological Sciences · 2018
20. Three-dimensional simulation of the Caenorhabditis elegans body and muscle cells in liquid and gel environments for behavioural analysisPhilosophical Transactions of the Royal Society B Biological Sciences · 2018