Bacterial species differ dramatically in their growth rates, reflecting distinct ecological strategies and physiological constraints. Because protein synthesis is a major determinant of cellular replication, I examined how genomic investment in the translation machinery varies across bacteria with widely different doubling times. Using 20 bacterial species spanning two major bacterial kingdoms (Bacillati and Pseudomonadati), I quantified ribosomal RNA (rrn) operon number, total tRNA gene number, and the allocation of tRNA genes among amino acids. Rapidly replicating Vibrio natriegens has 11 rrn operons and 129 tRNA genes in its genome, whereas slowly replicating Borrelia burgdorferi has only one rrn operon and 32 tRNA genes. I show that both the rrn operon number and the tRNA gene number decline sharply with increasing generation time, a pattern observed independently within each bacterial kingdom. Moreover, tRNA gene allocation is highly non-uniform: amino acids that are frequently used in proteins and encoded by large synonymous codon families are supported by disproportionately more tRNA genes. This relationship is well described by a simple model incorporating amino acid usage and codon family size, as illustrated in rapidly growing species such as Vibrio natriegens and Clostridium perfringens. In contrast, slow-growing bacteria maintain relatively minimalist translation systems. Together, these results demonstrate that bacterial genomes are systematically optimized for translation in a manner tightly coupled to growth strategy, revealing how natural selection tunes both the capacity and structure of the translation machinery.
Xuhua Xia (Thu,) studied this question.