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Data sharing is important in the biological sciences to prevent duplication of effort, to promote scientific integrity, and to facilitate and disseminate scientific discovery. Sharing requires centralized repositories, and submission to and utility of these resources require common data formats. This is particularly challenging for multidimensional microscopy image data, which are acquired from a variety of platforms with a myriad of proprietary file formats (PFFs). In this paper, we describe an open standard format that we have developed for microscopy image data. We call on the community to use open image data standards and to insist that all imaging platforms support these file formats. This will build the foundation for an open image data repository.
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Melissa Linkert
University of Wisconsin–Madison
Curtis Rueden
University of Wisconsin–Madison
Chris Allan
National Park Service
The Journal of Cell Biology
University of Wisconsin–Madison
Rockefeller University
Wellcome Trust
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Linkert et al. (Mon,) studied this question.
synapsesocial.com/papers/69c2acbe1ae345d42ecab4f1 — DOI: https://doi.org/10.1083/jcb.201004104