Key points are not available for this paper at this time.
Experimental data on the transfer of small molecules between vacuum and water are relatively sparse. This makes it difficult to assess whether computational methods are truly predictive of this important quantity or merely good at explaining what has been seen. To explore this, a prospective test was performed of two different methods for estimating solvation free energies: an implicit solvent approach based on the Poisson-Boltzmann equation and an explicit solvent approach using alchemical free energy calculations. For a set of 17 small molecules, root mean square errors from experiment were between 1.3 and 2.6 kcal/mol, with the explicit solvent free energy approach yielding somewhat greater accuracy but at greater computational expense. Insights from outliers and suggestions for future prospective challenges of this kind are presented.
Building similarity graph...
Analyzing shared references across papers
Loading...
Anthony Nicholls
Charles Sturt University
David L. Mobley
University of California, Irvine
J. Peter Guthrie
University College Dublin
Journal of Medicinal Chemistry
Stanford University
University of California, San Francisco
Western University
Building similarity graph...
Analyzing shared references across papers
Loading...
Nicholls et al. (Thu,) studied this question.
synapsesocial.com/papers/6a17810ad990e918e6b425d1 — DOI: https://doi.org/10.1021/jm070549+
Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context: