BSMAP: whole genome bisulfite sequence MAPping program

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Abstract

BSMAP is the first general-purpose bisulfite mapping software. It is able to map high-throughput bisulfite reads at whole genome level with feasible memory and CPU usage. It is freely available under GPL v3 license at http://code.google.com/p/bsmap/.

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Authors

Yuanxin Xi

The University of Texas MD Anderson Cancer Center

Wei Li

BGI Group (China)

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BMC Bioinformatics

SHILAP Revista de lepidopterología

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Baylor College of Medicine

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Xi et al. (Mon,) studied this question.

synapsesocial.com/papers/69d8094161e2ce1627d18950 — DOI: https://doi.org/10.1186/1471-2105-10-232

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Also consider

Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context:

Genome-wide in situ exon capture for selective resequencing· 2007 · 692 citations
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands.· 1992 · 3,263 citations
SOAP: short oligonucleotide alignment program· 2008 · 3,723 citations
Mapping short DNA sequencing reads and calling variants using mapping quality scores· 2008 · 2,713 citations
Using quality scores and longer reads improves accuracy of Solexa read mapping· 2008 · 336 citations

BSMAP: whole genome bisulfite sequence MAPping program

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Abstract

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References and Citations

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Discussion

Cite this study

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