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A package for the creation and processing of multiple sequence alignment is described. There is no limit on the lengths of the processed nucleotide or amino acid sequences, and the number of sequences in the alignment is also unlimited. The main groups of functions are: a semiautomatic alignment editor; a wide set of functions for technical processing of alignments; nucleotide alignment mapping and translation; and similarity search functions. A user-friendly interface and a set of generally used file actions provide a special operational subsystem for everyday tasks.
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Sergey M. Resenchuk
Vladimir M. Blinov
Research Institute of Vaccines and Sera. Mechnikov of the Russian Academy of Medical Sciences
Computer applications in the biosciences
State Research Center of Virology and Biotechnology VECTOR
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Resenchuk et al. (Sun,) studied this question.
synapsesocial.com/papers/6a0f0b071c5e2d2319fa450a — DOI: https://doi.org/10.1093/bioinformatics/11.1.7