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<200), which we found to be highly informative in distinguishing cancer from benign tissue. Malignant prostate cells showed marked metabolic derangements compared with their benign counterparts. Using the "Least absolute shrinkage and selection operator" (Lasso), we analyzed all metabolites from the DESI-MS data and identified parsimonious sets of metabolic profiles for distinguishing between cancer and normal tissue. In an independent set of samples, we could use these models to classify prostate cancer from benign specimens with nearly 90% accuracy per patient. Based on previous work in prostate cancer showing that glucose levels are high while citrate is low, we found that measurement of the glucose/citrate ion signal ratio accurately predicted cancer when this ratio exceeds 1.0 and normal prostate when the ratio is less than 0.5. After brief tissue preparation, the glucose/citrate ratio can be recorded on a tissue sample in 1 min or less, which is in sharp contrast to the 20 min or more required by histopathological examination of frozen tissue specimens.
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Shibdas Banerjee
Tata Institute of Fundamental Research
Richard N. Zare
Northwestern University
Robert Tibshirani
Statens Serum Institut
Proceedings of the National Academy of Sciences
Stanford University
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Banerjee et al. (Tue,) studied this question.
synapsesocial.com/papers/6a1540d137103a43379f731e — DOI: https://doi.org/10.1073/pnas.1700677114