RIBM3DU‐Net: Glioma tumour substructures segmentation in magnetic resonance images using residual‐inception block with modified 3D U‐Net architecture

Abstract Glioma brain tumour is one of the life‐threatening diseases in the world. Tumour substructure segmentation by physicians is a time‐consuming task with the magnetic resonance imaging (MRI) technique due to the size of clinical data. An automatic and well‐trained method is essential to detect and segment the tumour which increase the survival of the patients. The proposed work aims to produce high accuracy on glioma substructures segmentation with less computation time using deep learning. From the literature survey, the following challenges are found: (i) computing complex spatial boundaries between normal and tumour tissues, (ii) feature reduction and (iii) overfitting problems. Hence, we proposed a fully automatic glioma tumour segmentation using a residual‐inception block (RIB) with a modified 3D U‐Net (RIBM3DU‐Net). It includes three phases: pre‐processing, modified 3D U‐Net segmentation and post‐processing. From the results, RIB with U‐Net enhances the segmentation accuracy. GPU parallel architecture reduces the computation time while training and testing. For quantitative analysis, comprehensive experiment results were computed and compared with state‐of‐the‐art methods. It achieves better Dice scores on enhancing tumour, tumour core and complete tumour of 87%, 87% and 94%, respectively. GPU speedup folds yield up to 48× when compared with CPU. Quantitatively, 3D glioma volume is rendered from the obtained segmented results and estimated using the Cavalieri estimator.