Labile carbon content and nutrient availability determines microbial composition in topsoil and subsoil following land‐use change in subtropical China

Abstract Evaluating the impact of land‐use intensification on soil microbial communities is essential for recognizing the implications on microbiome stability and ecosystem function. The microbial biomass and enzyme activity in the topsoil have been found to decrease as a consequence of natural forest conversion; however, the impact of land‐use conversion on the microbes in subsoil remains largely unclear. Here, we examined the effect of primary forest conversion to plantations and cultivated lands on microbial communities at three sites with similar soil, climate, and landform. The forest conversion was set as the experimental treatment, and the primary forest as the control. A linear mixed‐effect model was applied to investigate the role of environmental parameters in shaping the soil microbial biomass and community determined by the phospholipid fatty acids analysis in both the topsoil (0–20 cm) and subsoil (20–40 cm). Compared to the primary forest, the total microbial biomass, β‐1,4‐ N ‐acetylglucosaminidase, leucine aminopeptidase, acid phosphatase activities, and labile organic C fraction contents in both topsoil and subsoil were reduced in cultivated lands. The ratios of gram‐positive bacteria to gram‐negative bacteria and arbuscular mycorrhizal fungi to saprotrophic fungi in subsoil decreased by 45%–53% and increased by 29%–151%, respectively, following the primary forest conversion to cultivated lands. The response ratio (the percentage of microbial and enzyme indicator response to the primary forest conversion) ranged from −80% to 140% depending on the soil depth, specific microbial group, and converted land‐use type. Microbial biomass and enzyme activity are primarily controlled by the labile organic C content and nutrients availability in both topsoil and subsoil. This study suggests that the primary forest conversion exerts an adverse effect on the microbial biomass, enzyme activity, and substrate availability in both topsoil and subsoil, highlighting the degradation of subsoil health in subtropical China.