Re‐identification of patterned animals by multi‐image feature aggregation and geometric similarity

Abstract Image‐based re‐identification of animal individuals allows gathering of information such as population size and migration patterns of the animals over time. This, together with large image volumes collected using camera traps and crowdsourcing, opens novel possibilities to study animal populations. For many species, the re‐identification can be done by analysing the permanent fur, feather, or skin patterns that are unique to each individual. In this paper, the authors study pattern feature aggregation based re‐identification and consider two ways of improving accuracy: (1) aggregating pattern image features over multiple images and (2) combining the pattern appearance similarity obtained by feature aggregation and geometric pattern similarity. Aggregation over multiple database images of the same individual allows to obtain more comprehensive and robust descriptors while reducing the computation time. On the other hand, combining the two similarity measures allows to efficiently utilise both the local and global pattern features, providing a general re‐identification approach that can be applied to a wide variety of different pattern types. In the experimental part of the work, the authors demonstrate that the proposed method achieves promising re‐identification accuracies for Saimaa ringed seals and whale sharks without species‐specific training or fine‐tuning.