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August 26, 2025Open Access

Identification of Proteomic Biomarkers and Therapeutic Targets for Vitiligo Using a Two‐Sample Proteome‐Wide Mendelian Randomization Approach

Key Points

Seven proteins were causally linked to vitiligo risk, with HERC4 and NDC80 showing significant potential as biomarkers.
Mendelian randomization utilized GWAS data from 131 cases of vitiligo and over 200,000 controls to establish links.
The study integrates proteomics and genomic data, exploring five MR methods to evaluate protein-Vitiligo risk connections.
These findings may advance precision medicine strategies by offering novel biomarkers and therapeutic targets for vitiligo.

Abstract

ABSTRACT Background Vitiligo is a chronic autoimmune disorder characterized by melanocyte loss and depigmented skin patches. Effective treatment options are limited, and therapeutic progress has been hindered by incomplete understanding of its precise pathogenic mechanisms. We aimed to identify candidate protein biomarkers and therapeutic targets for vitiligo by integrating large‐scale proteomics and genomic data using Mendelian randomization (MR). Methods Using two‐sample MR analysis, we leveraged genome‐wide association study (GWAS) data for vitiligo (131 cases and 207 482 controls of European descent) and proteomic data comprising 4907 plasma proteins from the Decode cohort (35 559 participants). Causal relationships between genetically predicted plasma protein levels and vitiligo risk were evaluated through five complementary MR methods, along with enrichment analyses to explore their biological implications. Further validation was conducted via independent transcriptomic datasets, single‐cell RNA sequencing, and molecular docking analysis to identify potential therapeutic compounds. Results We identified seven proteins (HEPHL1, PRDX1, DEFA1, CSGALNACT2, HERC4, NDC80, and SPHK2) causally associated with vitiligo risk. Notably, HERC4 and NDC80 exhibited robust expression in vitiligo lesions across validation datasets. Functional enrichment analysis implicated these proteins in oxidative stress regulation, immune modulation, and cellular signaling pathways. Molecular docking analyses further highlighted potential therapeutic agents, including zoledronic acid and gramine. Conclusions Our integrative MR analysis identified novel protein biomarkers and promising therapeutic targets for vitiligo, particularly HERC4 and NDC80. These findings offer potential opportunities for improved diagnosis and the development of targeted therapies, advancing precision medicine approaches for vitiligo management.

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