Explainable Deep Ensemble Meta-Learning Framework for Brain Tumor Classification Using MRI Images

Background: Brain tumors can severely impair neurological function, leading to symptoms such as headaches, memory loss, motor coordination deficits, and visual disturbances. In severe cases, they may cause permanent cognitive damage or become life-threatening without early detection. Methods: To address this, we propose an interpretable deep ensemble model for tumor detection in Magnetic Resonance Imaging (MRI) by integrating pre-trained Convolutional Neural Networks—EfficientNetB7, InceptionV3, and Xception—using a soft voting ensemble to improve classification accuracy. The framework is further enhanced with a Light Gradient Boosting Machine as a meta-learner to increase prediction accuracy and robustness within a stacking architecture. Hyperparameter tuning is conducted using Optuna, and overfitting is mitigated through batch normalization, L2 weight decay, dropout, early stopping, and extensive data augmentation. Results: These regularization strategies significantly enhance the model’s generalization ability within the BR35H dataset. The framework achieves a classification accuracy of 99.83 on the MRI dataset of 3060 images. Conclusions: To improve interpretability and build clinical trust, Explainable Artificial Intelligence methods Grad-CAM++, LIME, and SHAP are employed to visualize the factors influencing model predictions, effectively highlighting tumor regions within MRI scans. This establishes a strong foundation for further advancements in radiology decision support systems.