Abstract Rationale Per the 2021 Sepsis Campaign, it is recommended that hospitals use a performance improvement program for sepsis screening, utilizing machine learning to improve specificity. Around 20% of sepsis at the Mayo Clinic, Rochester site is hospital acquired. As inpatient sepsis is usually detected by extreme physiologic derangement or clinical concern, we seek to leverage risk factors beyond traditional SIRS and sepsis criteria to create a machine and deep learning based risk stratification model to improve the precision of sepsis monitoring. Methods We designed a retrospective observational case control study, including patients diagnosed with sepsis as an inpatient at the Mayo Clinic, Rochester hospital and compared them to patients without a sepsis diagnosis over the last 7 years. Sepsis diagnosis was labeled by a combination of sepsis ICD codes and initial lactate elevation. We excluded transfers from outside hospitals, direct admissions for sepsis and patients diagnosed with sepsis in the emergency department. Data was extracted using Mayo Data Explorer, and data preparation and validation were performed using JMP Statistical Software and Python libraries. Feature selection was critical as we examined all data from previous contacts with healthcare, environmental factors, and dynamic trends of inpatient objective data; amongst 5,000 options of lab tests and vital measurements, we selected near 100 to reduce model complexity. We used XG Boost to train our model with a baseline cohort of 100 sepsis patients and 1000 patients without sepsis. Results We created a model that categorically classified patients into three sepsis risk level profiles (low-risk, medium-risk, high-risk) with performance metrics of a specificity of 97%, sensitivity of 65% and area under the receiver operating characteristic curve of 95%. Amongst laboratory data, lactate and creatinine had the highest feature importance (figure below). Our model also identified variables with the least importance to further refine our architecture. Conclusions Our model is one of the first sepsis risk stratification models whose algorithm is optimized for non-ICU inpatient wards, while the majority of similar studies were conducted on ICU and emergency department patients due to limited data availability. The model’s high specificity will allow for earlier sepsis recognition. By including our full cohort of 7,500 patients with sepsis and 35,000 patients without sepsis, we hope to improve class imbalance and increase sensitivity. By integrating transformer architecture, we seek to eliminate variables of low significance to create a model with more practical use, while maintaining high specificity. This abstract is funded by: None
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N R Kumar
Mayo Clinic in Arizona
S Abramovich
Mayo Clinic in Arizona
V Karanam
Mayo Clinic in Arizona
American Journal of Respiratory and Critical Care Medicine
Mayo Clinic in Arizona
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Kumar et al. (Fri,) studied this question.
synapsesocial.com/papers/6a0d4fecf03e14405aa9b67d — DOI: https://doi.org/10.1093/ajrccm/aamag162.6225
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