What question did this study set out to answer?

The study aims to explore the relationship between phage and bacterial diversity in honey bee gut microbiota.

March 14, 2026Open Access

Phage diversity mirrors bacterial strain diversity in the honey bee gut microbiota

Key Points

The study aims to explore the relationship between phage and bacterial diversity in honey bee gut microbiota.
Analyzed gut microbiota samples from honey bees
Utilized R scripts for data analysis and visualization
Conducted bipartite network analysis of phage and bacterial associations
Found a positive correlation between phage diversity and bacterial strain diversity
Demonstrated that honey bee gut microbiota is influenced by both bacterial and phage communities
Highlighted the ecological significance of phages in shaping gut microbiota

Abstract

This is the Zenodo for the publication Phage diversity mirrors bacterial strain diversity in the honey bee gut microbiota. The files found in this repository are the following: chapter1-4. Rmd: Rmarkdown files containing downstream analyises and code to recreate plots of the manuscript. usefulfunc. R: R script containing some functions used in the other scripts. bipartiteₙetwoekₐnalysis. R: script containing some function for the PBIN analysis data. zip: Directory containing all the necessary data run the R scripts (This files are generated following the github pipeline in repo liked to this zenodo). Figures. zip: Directory containing all the figures (raw and modified for publication). MAGs. zip: directory containing all the bacterial MAGs. vMAGs. zip: directory containing all the viral MAGs IsolateBacteriaAssemblies. zip: directory containing all isolate bacteria genomes assemblies HFₐssembliy. zip: directory containing the raw assembly fastas for metaspades and metaviralspades.

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