Umi-pipeline-nf: A modular and scalable workflow for UMI-tagged nanopore amplicon analysis with real time sequencing integration and GPU-acceleration

Key Points

• The research aims to develop a scalable workflow for analyzing UMI-tagged nanopore amplicon sequences.
• Developed a modular workflow
• Integrated real-time sequencing capabilities
• Utilized GPU acceleration for data processing
• Demonstrated improved analysis efficiency
• Achieved faster data processing times
• Facilitated real-time sequencing integration

Abstract