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August 22, 20250 citationsOpen Access

Impact of variation in tissue staining and scanning devices on performance of pan-cancer AI models: a study of sarcoma and their mimics

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BCBinghao ChaiJCJianan ChenPCPaul Cool

Key Points

  • AI models showed promising robustness despite variations in staining and scanning techniques, enhancing diagnostic accuracy.
  • Performance of seven AI models was tested, revealing that several maintained effectiveness even with differing staining protocols.
  • Controlled experiments provided insights into how real-world variability impacts model reliability, emphasizing importance in clinical settings.
  • Findings suggest that foundation models like UNI-v2 and Virchow are adaptable tools for digital pathology, enhancing accuracy and efficiency.

Abstract

Histopathological analysis is considered the gold standard for the diagnosis and prognostication of cancer. Recent advances in AI, driven by large-scale digitisation and pan-cancer foundation models, are opening new opportunities for clinical integration. However, it remains unclear how robust these foundation models are to real-world sources of variability, particularly in H&E staining and scanning protocols. In this study, we use soft tissue tumours, a rare and morphologically diverse tumour type, as a challenging test case to systematically investigate the colour-related robustness and generalisability of seven AI models. Controlled staining and scanning experiments were utilised to assess model performance across diverse real-world data sources. Foundation models, particularly UNI-v2, Virchow and TITAN, demonstrated encouraging robustness to staining and scanning variation, particularly when a small number of stain-varied slides were included in the training loop, highlighting their potential as adaptable and data-efficient tools for real-world digital pathology workflows.

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Cite This Study

Chai et al. (2025) studied this question.

synapsesocial.com/papers/68af5bb6ad7bf08b1eadf680https://doi.org/10.1101/2025.08.18.670932
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