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January 14, 2026Plant-Environment Interactions1 citationsOpen Access

High‐Throughput Screen of NPQ in Sorghum Shows Highly Polygenic Architecture of Photoprotection

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RVRichard L. VathSFSamuel B. FernandesBMBrandon Monier

Key Points

  • The aim is to understand the genetic basis of photoprotection in sorghum and identify candidate genes for improvement.
  • Screened 861 genetically diverse sorghum accessions over two years.
  • Evaluated non‐photochemical quenching traits and chlorophyll fluorescence parameters.
  • Used GWAS and TWAS to identify genetic correlates and candidate genes.
  • Broad‐sense heritability ranged between 0.3 and 0.65 across chlorophyll fluorescence parameters.
  • Identified 110 unique candidate genes associated with photoprotection.
  • Revealed a polygenic architecture with many small‐effect loci influencing traits.

Abstract

ABSTRACT Natural genetic variation in photosynthesis and photoprotection within crop germplasm represents an untapped resource for crop improvement. Sorghum bicolor (sorghum) is one of the world's most widely grown crops, yet the genetic basis of photoprotection in sorghum is not well understood. This study examined genetic variation in non‐photochemical quenching traits by screening a field‐grown panel of 861 genetically diverse natural sorghum accessions across 2 years. Broad‐sense heritability ranged between 0.3 and 0.65 across different chlorophyll fluorescence parameters. A combination of genome‐ and transcriptome‐wide (GWAS and TWAS) identification of genetic correlates with the observed trait variation uncovered a complex genetic architecture of many significant small‐effect loci. An ensemble approach based on GWAS and TWAS results and the covariance between different fluorescence parameters was used to identify 110 unique candidate genes. The resulting high‐confidence candidates reveal novel genetic associations with photoprotection and offer resources for further genetic studies and crop genomic improvement efforts.

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Cite This Study

Vath et al. (2026) studied this question.

synapsesocial.com/papers/6966f32713bf7a6f02c00ecahttps://doi.org/10.1002/pei3.70114
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