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January 22, 2026PLoS ONE3 citationsOpen Access

Improving micromorphological analysis with CNN-based segmentation of flint/obsidian, bone and charcoal

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RARafael ArnayPGPedro García-VillaJHJavier Hernández‐Aceituno

Key Points

  • This research aims to develop a deep learning tool to enhance the segmentation and quantification of materials in archaeological micromorphology.
  • Developed a deep learning segmentation tool for archaeological materials.
  • Used high-resolution photomicrographs of 57 thin sections in polarized light.
  • Employed CNNs, specifically a U-Net with an InceptionV4 encoder, for training and evaluation.
  • Achieved mean IoU scores of 0.96 for flint/obsidian, 0.80 for bone, and 0.82 for charcoal.
  • Achieved balanced accuracy scores of 0.99 for flint/obsidian, 0.92 for bone, and 0.85 for charcoal.
  • Demonstrated the potential of deep learning to improve objectivity and reproducibility in micromorphology.

Abstract

The quantification and identification of components in archaeological micromorphology remain subjective and challenging, particularly for early-career researchers. To address this, we developed a deep learning tool for the automatic segmentation of three materials commonly found in Palaeolithic contexts and thin sections: bone, charcoal, and lithic fine-grained debitage (flint and obsidian). Using high-resolution photomicrographs of 57 thin sections in plane-polarised and cross-polarised light, we trained and evaluated state-of-the-art convolutional neural networks (CNNs) for material segmentation. The best-performing configuration, a U-Net with an InceptionV4 encoder, achieved mean intersection over union (IoU) scores of 0.96 for flint/obsidian, 0.80 for bone, and 0.82 for charcoal. The models also classified the relative abundance of each material with balanced accuracies of 0.99 for flint/obsidian, 0.92 for bone, and 0.85 for charcoal. These results demonstrate the potential of deep learning to enhance objectivity, accuracy, and reproducibility in archaeological micromorphology, providing a valuable resource for future geoarchaeological research.

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Cite This Study

Arnay et al. (2026) studied this question.

synapsesocial.com/papers/6971bd90642b1836717e245chttps://doi.org/10.1371/journal.pone.0340353
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