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February 2, 2026Open Forum Infectious Diseases0 citationsOpen Access

The Molecular Epidemiology and Congregate Transmission Dynamics of Medically Attended Acute Respiratory Infections (MAARIs) at the United States Naval Academy (USNA) during Plebe Summer

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EHEmily HoneSRStephanie A RichardKSKat Schmidt

Key Result

Congregate military training during a 6-week period was associated with a 40% incidence (473/1,187) of medically attended acute respiratory infections among incoming freshmen.

Key Points

  • The study aims to understand the epidemiology and impact of medically attended acute respiratory infections during Plebe Summer at the Naval Academy.
  • Collected residual nasal swabs from midshipmen with ARIs for testing.
  • Performed multiplex PCR testing and viral genomic sequencing on the swabs.
  • Abstracted patient demographics, symptoms, diagnoses, and outcomes from medical records.
  • Conducted integrated epidemiological analyses.
  • 40% of incoming freshmen sought healthcare for ARIs during Plebe Summer 2023.
  • 54% of collected swabs tested positive for at least one virus, with some showing multiple infections.
  • Rhinovirus/enterovirus were most frequently detected, followed by SARS-CoV-2.
  • SARS-CoV-2 detections were linked to longer sick-in-quarters durations.

Study Design

Type

Observational (n=1,187)

Multicenter

No

Structured PICO

What is the incidence, viral etiology, and impact of medically attended acute respiratory infections among midshipmen at the US Naval Academy during Plebe Summer?

P
Population
1,187 incoming freshmen and additional upperclassmen at the United States Naval Academy evaluated for acute respiratory infections during a 6-week summer training period.
E
Exposure
Multiplex PCR testing and viral genomic sequencing of residual nasal swabs, with abstraction of medical records.
O
Outcome
Respiratory virus incidence, viral detection rates, and impact (sick-in-quarters duration).

High attack rates of medically attended acute respiratory infections, driven by diverse viruses including rhinovirus and SARS-CoV-2, cause substantial training days lost in congregate military settings.

Abstract

Abstract Background Understanding the epidemiology of acute respiratory infections (ARIs) in congregate military settings is vital to force health protection. This analysis describes insights gleaned from the “Acute Respiratory Infections at the Academy” (ARIA) study regarding respiratory virus incidence and impact at the United States Naval Academy during ‘Plebe Summer’ 2023, an intense 6-week training for all incoming freshmen (plebes). Methods Residual nasal swabs collected as part of the standard-of-care work-up in midshipmen who presented to clinic with an ARI were sent for multiplex PCR testing and viral genomic sequencing. Corresponding patient demographics, symptoms, diagnoses, and outcomes were abstracted from medical records. Integrated epidemiological and viral genomic analyses were performed. Results During Plebe Summer 2023, 40% of incoming freshmen (473/1,187) sought healthcare for at least one ARI, as did 71 upperclassmen. Swabs were collected in 598 of 615 ARIs (97%), among which 324 (54%) tested positive for at least one virus; 2+ viruses were detected in 52/324 (16%). Rhinovirus/enterovirus was most frequently detected, followed by SARS-CoV-2; several SARS-CoV-2 variants, all Omicron sub-lineages, were identified. There was considerable symptom overlap among MAARIs in which different viruses were detected. Most (83%) midshipmen with a medically attended ARI (MAARI) spent at least one day sick-in-quarters (SIQ). SARS-CoV-2 detections were associated with the longest SIQ durations. Conclusions Plebe Summer 2023 was characterized by high MAARI attack rates, considerable viral diversity and viral co-detections, and substantial training days lost. ARIA highlights the importance of ongoing characterization of ARIs in congregate populations to help inform mitigation strategies.

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Cite This Study

Hone et al. (2026) conducted an observational in Acute respiratory infections (ARIs) (n=1,187). Congregate military training (Plebe Summer) was evaluated on Incidence of medically attended acute respiratory infections (MAARIs). Congregate military training during a 6-week period was associated with a 40% incidence (473/1,187) of medically attended acute respiratory infections among incoming freshmen.

synapsesocial.com/papers/6980ffa4c1c9540dea812425https://doi.org/10.1093/ofid/ofag036
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