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February 8, 2026ChemBioChem0 citationsOpen Access

Enhancement of Nitrogenase Activity in Recombinant Escherichia coli by Replacing Upstream Region of nif Operon from Paenibacillus Species

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YHYuki HondaKTKotone TakeuchiSHSawako Hayakawa

Key Points

  • The aim is to investigate the enhancement of nitrogenase activity in recombinant E. coli by substituting the upstream region of the nif operon.
  • Constructed recombinant E. coli with nitrogen fixation genes and upstream regions from Paenibacillus species.
  • Evaluated various nif operons for consistent functionality in E. coli.
  • Analyzed promoter activity of upstream regions affecting nitrogenase expression.
  • Combined promoter replacement with synthetic biology techniques for improved electron transfer.
  • Recombinant E. coli demonstrated high nitrogenase activity with the correct upstream region linked to the nif operon.
  • Certain upstream regions acted as effective σ 70-dependent promoters, enhancing expression.
  • Promoter replacement and synthetic biology approaches improved electron transfer and protein maturation.

Abstract

Recombinant Escherichia coli with nitrogen‐fixation activity has been constructed using a simple approach of introducing a minimal gene set of nitrogen fixation ( nif ) genes along with its upstream region from Paenibacillus species; however, limitations may exist in nif expression. To understand the limitations of heterologous mass production of nitrogenase in E. coli , we evaluated this approach using various nif operons cloned from Paenibacillus species. Initial attempts revealed that, despite the high nitrogenase activity observed in the parental strains, the corresponding nif operons did not consistently function in E. coli . Further analysis revealed that certain upstream regions of the nif operons function as constitutive σ 70 ‐dependent promoters in E. coli , and the host acquired nitrogenase activity only when the upstream region acted as a constitutive promoter. Notably, recombinant E. coli achieved high nitrogenase activity by linking a functional upstream region to the nif operon from a highly active parental strain. Additional improvements in nitrogenase activity were achieved by combining promoter replacement with synthetic biology approaches to enhance electron transfer from glucose metabolism to nitrogenase and metal cluster assembly for protein maturation. These findings provide new insights into heterologous nitrogenase production in E. coli for sustainable nitrogen fixation.

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Cite This Study

Honda et al. (2026) studied this question.

synapsesocial.com/papers/698827e20fc35cd7a8846cechttps://doi.org/10.1002/cbic.202500711
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