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February 12, 2026Journal of Chemical Information and Modeling5 citations

KPGT-Fluor: A Graph Transformer Framework for Accurate Property Prediction of Fluorescent Dyes under Different Solvent Environment

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JLJintian LyuJZJiamin ZhongNZNan Zhou

Key Points

  • The aim is to develop a machine learning framework that accurately predicts the optical properties of fluorescent dyes based on their solvent environments.
  • Introduced KPGT-Fluor, an adaptation of the Knowledge-guided Pretraining of Graph Transformer framework.
  • Integrated solvent molecular descriptors to capture solvent effects on optical properties.
  • Evaluated predictive performance using an external test set with main ring structures and synthesized D-π-A molecules.
  • Achieved mean absolute errors of 10.55 nm and 12.09 nm for absorption and emission wavelengths, respectively.
  • MAE for the logarithm of extinction coefficient and quantum yield were 0.104 and 0.081, indicating high accuracy.
  • Demonstrated competitive performance compared to existing predictive models in four key property tasks.

Abstract

Data-driven machine learning (ML) technologies have become increasingly prevalent in the prediction of the optical properties of fluorescent dyes, especially across diverse solvent environments─a key requirement for the rational design of small solvatochromic systems. Here, we introduce KPGT-Fluor, a novel adaptation of the Knowledge-guided Pretraining of Graph Transformer (KPGT) framework, designed to model solvent-dependent photophysical behavior. Through the integration of solvent molecular descriptors, KPGT-Fluor effectively captures solvent environmental effects that influence optical properties. KPGT-Fluor exhibits strong predictive performance, achieving mean absolute error (MAE) of 10.55 and 12.09 nm for absorption wavelengths (λabs) and emission wavelengths (λem), respectively. For the logarithm of the extinction coefficient (ε) and quantum yield (Φ), the MAE values are 0.104 and 0.081, demonstrating a high accuracy. Compared with the existing models, a comprehensive evaluation across the four key property prediction tasks shows that KPGT-Fluor exhibits a more balanced and competitive overall performance. To further demonstrate the effectiveness of the proposed framework, an external test set containing representative main ring structures was selected. Furthermore, two novel D-π-A molecules were synthesized, and their optical properties in different solvents were experimentally compared with KPGT-Fluor predictions. These results highlight KPGT-Fluor as a powerful tool for predicting and discovering solvatochromic materials.

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Cite This Study

Lyu et al. (2026) studied this question.

synapsesocial.com/papers/698d6d445be6419ac0d523cbhttps://doi.org/10.1021/acs.jcim.5c02656
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