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February 14, 2026G3 Genes Genomes Genetics0 citationsOpen Access

Chromosome-scale genome assembly and annotation of the two-spotted cricket Gryllus bimaculatus (Orthoptera: Gryllidae)

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KKKosuke KataokaRSRyuto Sanno4TGTomasz S. Gaczorek

Key Points

  • The aim is to produce a high-quality, chromosome-scale genome assembly of Gryllus bimaculatus to enhance genomic studies.
  • Utilized Nanopore and PacBio HiFi long reads for genome assembly
  • Integrated Hi-C data for chromosome-scale analysis
  • Anchored assembly into 15 pseudomolecules
  • Achieved a genome assembly size of 1.62 Gbp with a scaffold N50 of 107.4 Mbp
  • Anchored 94.45% of the assembly consistent with a known karyotype
  • Updated annotation identified 14,964 protein-coding genes with a completeness of 95.7%

Abstract

Abstract The two-spotted cricket, Gryllus bimaculatus, is a key hemimetabolous model organism for developmental biology, neuroscience, and regeneration. The existing reference genome is, however, highly fragmented into 47, 877 scaffolds, hampering chromosome-scale analyses for these fields. Here, we report a high-quality, chromosome-scale genome assembly for the white-eyed mutant strain of this cricket, generated using a combination of Nanopore and PacBio HiFi long reads, integrated with Hi-C data. The final 1. 62 Gbp assembly achieves a scaffold N50 of 107. 4 Mbp, a significant improvement in contiguity over the previous 6. 3 Mbp N50. We anchored 94. 45% of the assembly into 15 pseudomolecules, consistent with the known karyotype (n = 15). The genome completeness (BUSCO v6. 0. 0 insectaₒdb12) reached 98. 1%. We also updated the annotation, identifying 14, 964 protein-coding genes. This gene set shows markedly improved completeness (BUSCO v6. 0. 0 insectaₒdb12: 95. 7%) compared with the previous annotation (81. 2%) and successfully recovers all nine essential neuropeptide genes previously reported as missing from the draft assembly. This chromosome-scale genomic resource provides an essential foundation for comparative and functional genomics in G. bimaculatus.

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Cite This Study

Kataoka et al. (2026) studied this question.

synapsesocial.com/papers/699011522ccff479cfe57d48https://doi.org/10.1093/g3journal/jkag036
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