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February 27, 2026BMC Microbiology0 citationsOpen Access

Expression of translation elongation factor P in Kocuria rhizophila is regulated by an inducible weak promoter

CLCongsi LiXZXiaomei ZhangXPXuan Peng

Key Points

  • The aim is to understand how the regulation of EF-P expression occurs in Kocuria rhizophila and its underlying mechanisms.
  • Utilized Kocuria rhizophila DC2201 strain for investigation.
  • Employed quantitative reverse transcription polymerase chain reaction (qRT-PCR) to measure efp transcription.
  • Analyzed the effects of temperature, pH, and antibiotics on efp expression.
  • Predicted and validated the efp promoter using bioinformatics and promoter mutants.
  • Efp expression is down-regulated at high temperatures during the exponential phase and up-regulated during the stationary phase.
  • Efp expression increases under acidic and alkaline stress conditions during the exponential phase.
  • Clindamycin exposure leads to a significant increase in efp expression at all growth stages.
  • Pefp is identified as a weak promoter with lower activity compared to the T7 promoter and Pgadph.

Abstract

Translation elongation factor P (EF-P), encoded by the efp gene, plays a crucial role in bacterial physiology, virulence, and stress response. Revealing the regulation of EF-P expression in bacteria is an important basis for revealing the molecular mechanisms underlying the aforementioned biomolecular functions. In this study, Kocuria rhizophila DC2201, a commonly used strain in quality control, was used as the research subject, and quantitative reverse transcription polymerase chain reaction (qRT-PCR) was employed to assess the effects of temperature, pH, and antibiotics on efp transcription. The efp promoter (designated as Pefp) in K. rhizophila was predicted using bioinformatics tools and validated through the construction of promoter mutants and the development of promoter functional validation plasmids. Under high temperatures (37 °C, 40 °C), efp expression in K. rhizophila is down-regulated during the exponential phase and then up-regulated during the stationary phase. Under acidic (pH 5. 2) and alkaline (pH 9. 2) stress conditions, efp expression is up-regulated during the exponential phase. When exposed to 0. 5 × MIC of clindamycin, an antibiotic stress, efp expression is significantly increased at all growth stages. The Pefp in K. rhizophila is located at positions 1, 507, 586–1507377 in the genome (NCBI Reference Sequence: NC₀10617. 1), with core regions including the − 10 (CATCAT) and − 35 (TGGACC) regions; this promoter exhibits lower activity compared to the T7 promoter and the promoter from the glyceraldehyde-3-phosphate dehydrogenase gene (Pgadph) of K. rhizophila DC2201. The results revealed that the efp expression in K. rhizophila is inducible, and the Pefp is a weak promoter. These findings could lay the groundwork for identifying transcription factors involved in efp gene expression and further exploring the transcriptional regulation of EF-P in K. rhizophila.

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Cite This Study

Li et al. (2026) studied this question.

synapsesocial.com/papers/69a134fbed1d949a99abe756https://doi.org/10.1186/s12866-026-04860-9
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