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February 28, 2026Microbial Genomics0 citationsOpen Access

Full-genome analysis of emerging Coxsackievirus B4 genotype D strains associated with herpangina in eastern China

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XHXiaosong HuYSYuxiang SunBXBo Xing

Key Result

Coxsackievirus B4 genotype D strains in eastern China are recent European introductions showing unique antigenic changes, indicating complex global spread and need for surveillance.

Key Points

  • This research aims to analyze emerging Coxsackievirus B4 genotype D strains linked to herpangina.
  • Conducted herpangina surveillance in Yuhuan City, China in 2024
  • Performed full-length genome sequencing on identified strains Z168 and Z296
  • Analyzed nucleotide similarity and phylogenetic relationships with global strains
  • Investigated recombination events involving original Coxsackievirus strains
  • Strains Z168 and Z296 showed high similarity to UK Coxsackievirus B4 strains from 2017
  • Identified unique amino acid substitution indicating potential changes in antigenicity
  • Phylogenetic analysis indicated complex transmission patterns and a distinct lineage from earlier Chinese strains

Structured PICO

P
Population
Two Coxsackievirus B4 strains (Z168, Z296) identified in 2024 herpangina surveillance in Yuhuan City, China
I
Intervention
Full-length genome sequencing and phylogenetic analysis
O
Outcome
Genomic characteristics, recombination events, and phylogenetic relationships

Genomic analysis of two Coxsackievirus B4 strains from eastern China indicates a recent European introduction of genotype D, highlighting the need for ongoing molecular surveillance.

Abstract

In 2024 herpangina surveillance in Yuhuan City, China, two Coxsackievirus B4 strains (Z168, Z296) were identified. Full-length genome sequencing revealed that both strains belonged to genotype D that was first documented in eastern China. The two strains showed the highest nucleotide similarity to Coxsackievirus B4 strains isolated in the UK (2017). In the recombination events, both major parental strains were identified as Coxsackievirus B4 strains isolated in France (2015 and 2017). Echovirus 11 and Coxsackievirus B5 were detected as minor parental strains, indicating intertypic recombination. Phylogenetically, Z168 and Z296 clustered closely with European genotype D strains (2013-2024) but were distant from previously reported Chinese genotype D strains (Yunnan 2013-2016; Tianjin 2019). Bayesian phylogeographic reconstruction suggested a complex global transmission history of Coxsackievirus B4 with increasing cross-border transmission in recent decades, including genotypes A, D and E transmitting among North America, Europe and Asia. Both strains possessed a unique amino acid substitution within a putative neutralizing epitope, suggesting potential antigenic evolution. These findings indicate that the Z168 and Z296 strains likely represent a recent European introduction, forming a lineage distinct from earlier Chinese genotype D isolates. This highlights the need for molecular surveillance to track Coxsackievirus B4 emergence and evolution.

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Cite This Study

Hu et al. (2026) studied this question. Coxsackievirus B4 genotype D strains in eastern China are recent European introductions showing unique antigenic changes, indicating complex global spread and need for surveillance.

synapsesocial.com/papers/69a286eb0a974eb0d3c0241ahttps://doi.org/10.1099/mgen.0.001656
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