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March 15, 2026Reproductive Medicine and Biology3 citationsOpen Access

Endometrial Microbiome and Implantation: From Basic Knowledge to Clinical Medicine

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DHDaiki HiratsukaMMMitsunori MatsuoYHYasushi Hirota

Key Points

  • To explore how the endometrial microbiome impacts implantation and fertility outcomes.
  • Clinically oriented narrative review of existing studies on endometrial microbiome and its association with implantation.
  • Analysis of vaginal dysbiosis and its link to reproductive outcomes.
  • Review of Lactobacillus profiles in relation to ART outcomes.
  • Lactobacillus-enriched profiles correlate with better pregnancy outcomes.
  • Non–Lactobacillus-dominant patterns are linked to higher rates of implantation failure.
  • Testing-guided management using antibiotics and probiotics shows mixed results.

Abstract

ABSTRACT Background Recurrent implantation failure (RIF) is an infertility condition in which uterine factors remain difficult to diagnose and treat. Recent studies implicate the endometrial microbiome in implantation. Methods This clinically oriented narrative review summarizes female reproductive tract microbiota and evidence on endometrial microbiome testing and management in infertility. Main Findings (Results) Vaginal dysbiosis is linked to adverse reproductive outcomes and provides a reference for interpreting upper‐tract findings. Endometrial microbial signals are detectable by sequencing, but interpretation is challenged by the low‐biomass environment and vulnerability to carry‐over, kitome effects, and contamination. Across ART studies, a Lactobacillus ‐enriched endometrial profile is more often associated with favorable pregnancy‐related outcomes, whereas non– Lactobacillus ‐dominant patterns are more frequently reported in implantation failure, although effect sizes and statistical significance vary across cohorts and depend on sampling validity and cutoff definitions. Limited nonrandomized intervention studies suggest that testing‐guided targeted management (typically antibiotics with or without vaginal Lactobacillus ‐containing probiotics) may benefit selected patients, but protocols are heterogeneous and results remain inconsistent. Conclusion Evidence is rapidly evolving, yet observational designs and methodological variability limit causal inference. Future progress will require standardized sampling and contamination controls, outcome‐anchored threshold validation, and pragmatic real‐world evaluations of protocolized test‐and‐treat pathways using clinically meaningful endpoints.

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Cite This Study

Hiratsuka et al. (2026) studied this question.

synapsesocial.com/papers/69b6069b83145bc643d1cc0ahttps://doi.org/10.1002/rmb2.70040
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