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April 5, 2026Scientific Reports0 citationsOpen Access

Genome-wide identification and expression analysis of the expansin gene family in Brassica napus L

WLWen LuoJZJi ZhangHZHeng Zhang

Key Points

  • The aim is to identify and analyze the expansin gene family in Brassica napus to understand their functions in plant growth and development.
  • Comprehensive analysis of the expansin gene family using the ZS11 reference genome.
  • Classification of 127 EXP genes into four subfamilies based on structure.
  • Evolutionary analysis and segmental duplication assessment.
  • Expression analysis using qPCR across different stress conditions and tissues.
  • Identified 127 expansin genes, classified into four subfamilies: EXPA, EXPB, EXLA, and EXLB.
  • Each subfamily shows distinct structural characteristics and chromosomal distribution.
  • High conservation of EXP genes observed, with segmental duplication as a significant driver for gene expansion.
  • Differential expression of eight BnaEXs under stress conditions was noted.

Abstract

Expansins (EXPs) are a class of proteins that cause the relaxation of plant cell walls, thereby playing a role in regulating cell growth and various developmental processes in plants. In this study, a comprehensive analysis of the EXP gene family in Brassica napus L. (B. napus) was conducted, 127 EXP genes of B. napus identified using the ZS11 reference genome. These genes were classified into four subfamilies: alpha-expansin (EXPA), beta-expansin (EXPB), expansin-like A (EXLA), and expansin-like B (EXLB), with 98, 18, 5, and 6 members, respectively, evenly distributed across 19 chromosomes. The physicochemical properties, motif structures, and chromosomal distribution of these genes were evaluated. Evolutionary analysis within and between genomes indicated that the EXP genes(BnaEXs) exhibit a high degree of conservation., and segmental duplication was identified as the primary driver of the expansion of the BnaEXs in B. napus. Additionally, synteny analysis between B. napus, Arabidopsis thaliana L. and Nicotiana tabacum L. revealed that BnaEXs exhibit diverse evolutionary patterns across different plant species. The gene expression levels of the B. napus transcriptome database (BnPIR) demonstrated that most members are expressed in at least one tissue of B. napus. The differential expression of eight BnaEXs in response to various stress conditions and across different tissues was demonstrated by qPCR. The results of this study provide a solid foundation for further elucidating the biological functions of expansin genes in B. napus development and offer valuable genetic resources for future crop improvement.

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Cite This Study

Luo et al. (2026) studied this question.

synapsesocial.com/papers/69d1fca7a79560c99a0a254chttps://doi.org/10.1038/s41598-026-46606-7
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