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February 6, 2013Rice2,513 citationsOpen Access

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

YKYoshihiro KawaharaMBM. de la BastideJHJohn P. Hamilton

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Abstract

A revised, error-corrected, and validated assembly of the Nipponbare cultivar of rice was generated using optical map data, re-sequencing data, and manual curation that will facilitate on-going and future research in rice. Detection of polymorphisms between three different Nipponbare individuals highlights that allelic differences between individuals should be considered in diversity studies.

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Kawahara et al. (2013) studied this question.

synapsesocial.com/papers/69d7803bf07a12db70b8b17dhttps://doi.org/10.1186/1939-8433-6-4
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