PulseExploreJournal ClubDebatesTrendingResearchersJournals
Instagram
HomeExploreJournal ClubTrending
Synapse
⌘+K
Synapse
November 5, 2008Nucleic Acids Research924 citationsOpen Access

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

View Full Paper
PCPatricia P. ChanTLT. M. Lowe

Key Points

Key points are not available for this paper at this time.

Abstract

Transfer RNAs (tRNAs) represent the single largest, best-understood class of non-protein coding RNA genes found in all living organisms. By far, the major source of new tRNAs is computational identification of genes within newly sequenced genomes. To organize the rapidly growing collection and enable systematic analyses, we created the Genomic tRNA Database (GtRNAdb), currently including over 74,000 tRNA genes predicted from 740 species. The web resource provides overview statistics of tRNA genes within each analyzed genome, including information by isotype and genetic locus, easily downloadable primary sequences, graphical secondary structures and multiple sequence alignments. Direct links for each gene to UCSC eukaryotic and microbial genome browsers provide graphical display of tRNA genes in the context of all other local genetic information. The database can be searched by primary sequence similarity, tRNA characteristics or phylogenetic group. The database is publicly available at http://gtrnadb.ucsc.edu.

Ask AI
Helpful
Bookmark
Share
View Full Paper

Cite This Study

Chan et al. (2008) studied this question.

synapsesocial.com/papers/69d8355da2a48916bbbef689https://doi.org/10.1093/nar/gkn787
Ask AI
Helpful
Bookmark
Share
View Full Paper