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May 1, 2023BMC Genomic Data60 citationsOpen Access

Genomic benchmarks: a collection of datasets for genomic sequence classification

KGKatarína GrešováVMVlastimil MartinekDČDavid Čechák

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Abstract

Deep learning techniques revolutionized many biological fields but mainly thanks to the carefully curated benchmarks. For the field of Genomics, we propose a collection of benchmark datasets for the classification of genomic sequences with an interface for the most commonly used deep learning libraries, implementation of the simple neural network and a training framework that can be used as a starting point for future research. The main aim of this effort is to create a repository for shared datasets that will make machine learning for genomics more comparable and reproducible while reducing the overhead of researchers who want to enter the field, leading to healthy competition and new discoveries.

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Cite This Study

Grešová et al. (2023) studied this question.

synapsesocial.com/papers/69d98341e6ab964fb0835e36https://doi.org/10.1186/s12863-023-01123-8
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