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April 11, 2026BMC Chemistry2 citationsOpen Access

Novel indole-based scaffolds: Design, synthesis, molecular modeling, and anti-proliferative evaluation

RMReham A. Mohamed-EzzatAAAisha A. K. Al-AshmawyASAladdin M. Srour

Key Points

  • To design, synthesize, and evaluate indole-based scaffolds for their anti-proliferative properties against cancer cell lines.
  • Designed and synthesized novel indole-sulfonate and indole-aspirin mimic compounds.
  • Screened the compounds for cytotoxic activity on NCI-60 cell line panel at 10 µM concentration.
  • Performed molecular modeling and in silico ADME prediction studies for the synthesized compounds.
  • Compound 8a showed the highest anti-cancer potency with log GI50 values ranging from -4.50 µM to -6.45 µM.
  • Most sensitive cell lines included leukemia, melanoma, CNS cancer, ovarian cancer, and non-small cell lung cancer.
  • In vitro assays indicated that compound 8a has potential as a CDK-2 inhibitor.

Abstract

Abstract Two novel series of indole-based scaffolds have been designed, synthesized, and screened for their anti-proliferative activities on the NCI-60 cell line panel. The novel structures of the indole-sulfonate and indole-aspirin mimic conjugates were designed as cyclin-dependent kinase 2 (CDK-2) inhibitors. The design approach depends on molecular hybridization between the indole scaffold and alkanesulfonates or with aspirin mimic analogs. The synthesized compounds were screened for their cytotoxic activity at a concentration of 10 µ M. Compound 8a exhibited the most potent anticancer activity among the tested series and was further selected for the five-dose stage. At sub-micromolar doses, compound 8a showed anti-cancer potency against a panel of 60 tumor cell lines, with log GI 50 values in the range from − 4.50 µ M to -6.45 µM. With log GI 50 values of -6.45, -6.42, -6.31, -5.96, and − 5.87 µ M, respectively, the most sensitive cell lines were leukemia (SR), melanoma (MDA-MB-435), CNS cancer (SNB-75), ovarian cancer (OVCAR-3), and non-small cell lung cancer (NCI-H522). All the compounds were tested in an insilico study, encompassing drug likeness and absorption, distribution, metabolism, and excretion (ADME) prediction. A molecular modelling simulation study of the promising compound 8a in CDK-2 revealed the potential in vitro CDK-2 inhibitory assay result. The results demonstrate that, upon optimization, these novel indole-sulfonates could potentially act as new anticancer drugs.

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Cite This Study

Mohamed-Ezzat et al. (2026) studied this question.

synapsesocial.com/papers/69d9e5ec78050d08c1b7628ahttps://doi.org/10.1186/s13065-026-01776-3
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