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June 4, 2004Bioinformatics3,130 citationsOpen Access

Java Treeview—extensible visualization of microarray data

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ASAlok J. Saldanha

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Abstract

Open source software encourages innovation by allowing users to extend the functionality of existing applications. Treeview is a popular application for the visualization of microarray data, but is closed-source and platform-specific, which limits both its current utility and suitability as a platform for further development. Java Treeview is an open-source, cross-platform rewrite that handles very large datasets well, and supports extensions to the file format that allow the results of additional analysis to be visualized and compared. The combination of a general file format and open source makes Java Treeview an attractive choice for solving a class of visualization problems. An applet version is also available that can be used on any website with no special server-side setup.

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Alok J. Saldanha (2004) studied this question.

synapsesocial.com/papers/69db0b444a1e15904c836bb3https://doi.org/10.1093/bioinformatics/bth349
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