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April 12, 2026PLoS ONE0 citationsOpen Access

Genetic diversity of Schima superba based on physiological traits and SSR markers

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JLJiazhe LiuWSWenhui ShenZTZhangqiang Tan

Key Points

  • The aim is to evaluate the genetic and physiological diversity of Schima superba across different populations.
  • Combined physiological trait assessment and SSR-based genetic analysis in eight natural populations
  • Measured five physiological traits: chlorophyll, malondialdehyde, proline, soluble protein, and soluble sugar
  • Analyzed genetic diversity using 20 polymorphic SSR loci with STRUCTURE and PCoA analyses
  • Significant variation in physiological traits among populations (p < 0.01)
  • High genetic diversity detected (He = 0.804, PIC = 0.786)
  • Moderate genetic differentiation observed (Fst = 0.111) with strong gene flow (Nm = 2.23)
  • Identification of five genetic clusters and distinct genotypes in specific populations
  • Notable SSR–trait associations identified, particularly between SSR markers SS30, SS32 and physiological traits.

Abstract

Schima superba is an ecologically and economically valuable evergreen tree that plays a key role in reforestation, firebreak establishment, and urban landscaping in subtropical China. To evaluate its adaptive diversity, this study combined physiological trait assessment with SSR-based genetic analysis across eight natural populations comprising 122 individuals. Five physiological traits, including chlorophyll, malondialdehyde, proline, soluble protein, and soluble sugar, showed significant variation among and within populations ( p < 0.01), with HTHL and HBB populations exhibiting the greatest phenotypic variability. Using 20 polymorphic SSR loci, we detected high genetic diversity (He = 0.804, PIC = 0.786) and moderate differentiation (Fst = 0.111) with strong gene flow (Nm = 2.23). STRUCTURE and PCoA analyses revealed five genetic clusters, and the HBN and HTHL populations displayed distinct genotypes. Mixed linear model analysis identified 14 significant SSR–trait associations, with SS30 and SS32 strongly correlated with malondialdehyde and chlorophyll content. These results demonstrate a close relationship between genetic and physiological diversity in S. superba and provide essential molecular resources for its conservation, breeding, and adaptive improvement.

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Cite This Study

Liu et al. (2026) studied this question.

synapsesocial.com/papers/69db38274fe01fead37c654ahttps://doi.org/10.1371/journal.pone.0344465
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