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April 22, 2026Metabolites0 citationsOpen Access

Critical Role for Malic Enzymes in MYC-Mediated Cellular Adaptation to Glutamine Depletion

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YSYufan SiChinese Academy of Medical Sciences & Peking Union Medical CollegeWLWenhua LiSouth China Agricultural UniversityYCYang ChenChinese Academy of Medical Sciences & Peking Union Medical College

Key Points

  • To explore how malic enzymes ME1 and ME2 facilitate cellular adaptation to glutamine deprivation in MYC-driven tumors, especially in the context of p53 mutations.
  • Performed siRNA-mediated knockdown and overexpression experiments in MYC-amplified, p53-mutant SF188 glioblastoma cells.
  • Assessed cell survival using trypan blue exclusion and Annexin V/PI staining methods.
  • Conducted metabolite tracing with [U-13C5] glutamine using LC-MS and measured ROS levels and NADP+/NADPH ratios.
  • ME1 and ME2 enhance cell survival under glutamine starvation through distinct mechanisms linked to MYC expression.
  • ME1 stabilizes redox balance by producing NADPH, while ME2 stabilizes mutant p53 via proteasome inhibition.
  • The survival advantages provided by ME1 and ME2 are compromised with MYC knockdown, indicating their dependency on MYC activity.

Abstract

Background/Objectives: MYC-driven tumors exhibit significant glutamine addiction, but the metabolic adaptation mechanisms enabling their survival under glutamine deprivation remain incompletely understood. Malic enzymes catalyze the oxidative decarboxylation of malate to pyruvate while generating NADPH, linking central carbon metabolism to redox homeostasis. This study investigates whether and how ME1 and ME2 mediate cell adaptation to glutamine starvation and explores their functional division in relation to p53 status. Methods: Using MYC-amplified, p53-mutant (G266E) SF188 glioblastoma cells, we performed siRNA-mediated knockdown, overexpression, and rescue experiments. Cell survival was assessed by trypan blue exclusion and Annexin V/PI staining. ROS levels and NADP+/NADPH ratios were measured by DCFH-DA fluorescence and enzymatic assays. Metabolite tracing was conducted using U-13C5 glutamine followed by LC-MS. Key findings were validated in additional cell lines including HCT116, U2OS and MDA-MB-231. Results: ME1 and ME2 promote SF188 cell survival under glutamine deprivation, an effect that depends on their catalytic activity but is independent of TCA cycle anaplerosis. ME1 maintains redox balance by generating NADPH, and antioxidant treatment rescues the survival defect caused by ME1 knockdown. In contrast, ME2 does not contribute to redox regulation but stabilizes mutant p53 (G266E) via proteasome inhibition. Both of these pro-survival functions are attenuated upon MYC knockdown, suggesting a dependency on MYC expression. Across all cell lines tested, ME1 and ME2 also promote survival through redox maintenance, although the isoform responsible for antioxidant function differs. Conclusions: ME1 and ME2 support metabolic adaptation to glutamine starvation through distinct, isoform-specific mechanisms that depend on MYC expression and p53 mutation status. These findings suggest malic enzymes as potential therapeutic targets in MYC-driven, p53-mutant tumors.

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Cite This Study

Si et al. (2026) studied this question.

synapsesocial.com/papers/69e866c96e0dea528ddeb261https://doi.org/10.3390/metabo16040282
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