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April 26, 2026Hereditas0 citationsOpen Access

Identification and validation of biomarkers related to lysine β-hydroxybutyrylation in chronic obstructive pulmonary disease based on transcriptomics data

JLJing LeiJZJing ZhangLYLinfei Yang

Key Points

  • This study aims to find biomarkers related to lysine β-hydroxybutyrylation in COPD for improving therapeutic strategies.
  • Biomarkers extracted from public databases and literature regarding COPD and Kbhb-related genes.
  • Machine learning utilized to select candidate biomarkers from differentially expressed genes.
  • Validation of biomarkers through RT-qPCR and efficacy assessed via a nomogram.
  • Identified POLD2 and OTUD7B as downregulated biomarkers in COPD samples.
  • Nomogram demonstrated strong diagnostic capacity with significant correlations (OTUD7B: r > 0.3, P < 0.05; POLD2: r < -0.3, P < 0.05).
  • Molecular docking indicated strong affinity between biomarkers and estradiol.

Abstract

Chronic obstructive pulmonary disease (COPD) involves progressive lung inflammation and tissue destruction. Lysine β-hydroxybutyrylation (Kbhb) is linked to COPD. This study aimed to identify Kbhb-related biomarkers for COPD to aid therapeutic development. COPD data and Kbhb-related genes (Kbhb-RGs) were obtained from public databases and literature. Candidate genes were identified by overlapping differentially expressed genes (DEGs) with Kbhb-RGs. Biomarkers were selected using machine learning. Diagnostic efficacy was evaluated via a nomogram. Functional enrichment, immune infiltration, drug prediction, and molecular docking analyses were performed. Biomarker expression was validated by reverse transcription quantitative polymerase chain reaction (RT-qPCR). A total of 12 candidate genes were detected at the intersection of 765 DEGs and 1,493 Kbhb-RGs. Subsequently, POLD2 and OTUD7B were identified as biomarkers, and the expression of these 2 genes was found to be downregulated in COPD samples. The nomogram developed utilizing these biomarkers demonstrated a satisfactory capacity for differentiating among various sample types. Biomarkers were significantly enriched in transcriptional regulation and translation processes. Regulatory T cells displayed a significant positive linkage with OTUD7B (correlation (r) > 0.3, P < 0.05). Eosinophils were considerably negatively relevant to POLD2 and OTUD7B (r < -0.3, P < 0.05). Molecular docking studies demonstrated a strong binding affinity between biomarkers and estradiol. Compared with the control group, the expression levels of POLD2 and OTUD7B were significantly lower in the COPD group. This study identified POLD2 and OTUD7B as biomarkers for COPD, offering valuable insights that could support the development of targeted therapies.

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Cite This Study

Lei et al. (2026) studied this question.

synapsesocial.com/papers/69edac074a46254e215b3d7ehttps://doi.org/10.1186/s41065-026-00682-x
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