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April 28, 2026Scientific Reports2 citationsOpen Access

Spatio-temporal metabarcoding surveys in ports reveal homogenised communities of non-indigenous species with high genetic diversity and connectivity

JZJ. ZarceroAAA. AntichMFM. Fernandez-Tejedor

Key Points

  • The research aims to understand the patterns and dynamics of non-indigenous species in port environments over time.
  • Analyzed metazoan communities for one year in four medium-size harbours and a reference point.
  • Utilized standardized biological collectors and COI metabarcoding techniques.
  • Identified molecular operational taxonomic units, classifying them as non-indigenous or native species.
  • Identified 1,774 metazoan MOTUs, with 75 classified as NIS.
  • NIS accounted for 34-70% of reads in harbours, with variations based on location.
  • NIS exhibited higher haplotype diversity and lower genetic differentiation across harbours, indicating connectivity.

Abstract

Abstract Large commercial ports facilitate the introduction of non-indigenous species (NIS), while smaller harbours and marinas promote their regional spread, making harbour networks key drivers of biological invasions. We analysed spatio-temporal patterns of metazoan communities over one year in four medium-size harbours, as well as at an outside reference point, along the NW Mediterranean coast using standardised biological collectors and COI metabarcoding. We identified 1,774 metazoan molecular operational taxonomic units (MOTUs), of which 75 were classified as NIS. Although less diverse than native species, NIS accounted for 34-70% of reads in harbours, with the southernmost harbour showing the highest abundance, likely due to proximity to aquaculture facilities. Spatial structure varied among harbours, but NIS showed consistently low genetic differentiation and shared more MOTUs among sites than native species. Seasonal patterns affected both NIS and native communities. NIS also exhibited higher haplotype diversity and lower genetic differentiation across harbours, suggesting spread via local boating and recurrent introductions. These results highlight contrasting dynamics between NIS and native species in artificial environments and underscore the need for continued monitoring of harbour networks.

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Cite This Study

Zarcero et al. (2026) studied this question.

synapsesocial.com/papers/69f04e5b727298f751e72517https://doi.org/10.1038/s41598-026-49393-3
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