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May 10, 2026Scientific Reports0 citationsOpen Access

Nonlinear dimensionality reduction and Bayesian optimization for accelerating design of materials

MFMuhammad Osman Nadeem FarooquiIMIsaac Y. Miranda-ValdezTMTero Mäkinen

Key Points

  • This study aims to enhance the optimization of biobased foam formulations through efficient data-driven techniques.
  • Evaluated nonlinear dimensionality reduction through t-SNE and UMAP against PCA for foam optimization.
  • Trained Gaussian process on low-dimensional representations of rheological properties from existing dataset.
  • Applied Bayesian optimization in a single-step process to identify high-yield stress regions.
  • Bayesian optimization identified high-performing formulations achieving yield stress values comparable to those of the experimentally validated optimum.
  • Nonlinear dimensionality reduction methods provided comparable performance to PCA when appropriately tuned.

Abstract

Abstract Optimizing biobased foam formulations is challenging because experiments are costly and fast-to-measure surrogate properties occupy high-dimensional spaces. Bayesian optimization (BO) with Gaussian process regression (GPR) can guide data-efficient searches, but its performance depends on the dimensionality of the inputs. Here, we evaluate nonlinear dimensionality reduction (DR) methods, namely t-distributed stochastic neighbor embedding (t-SNE) and uniform manifold approximation and projection (UMAP), in comparison with principal component analysis (PCA) for biobased foam optimization. Using an existing dataset comprising 26 distinct methylcellulose-cellulose fiber foam formulations with rheological and mechanical measurements, we first train a Gaussian process (GP) on low-dimensional representations of rheological observables. BO is then applied in a single-step, non-sequential manner on this fixed dataset, to evaluate the quality of the latent representations and identify high-yield-stress regions. A second GP maps foam-formulation compositions to the reduced rheological coordinates, enabling reconstruction of candidate formulations in the composition space. Across all DR methods, BO identifies similar high-performing formulations achieving yield stress values comparable to the experimentally validated optimum. PCA acts as a baseline due to its deterministic and hyperparameter-free nature, while nonlinear methods can achieve comparable performance when appropriately tuned. These findings demonstrate that nonlinear DR-assisted BO provides a data-efficient framework for optimizing rheology-governed soft-matter materials.

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Cite This Study

Farooqui et al. (2026) studied this question.

synapsesocial.com/papers/6a002162c8f74e3340f9c4b8https://doi.org/10.1038/s41598-026-51517-8
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