PulseExploreJournal ClubDebatesTrendingResearchersJournals
Instagram
HomeExploreJournal ClubTrending
Synapse
⌘+K
Synapse
January 31, 2023Journal of Chemical Information and Modeling51 citations

Quantum Mechanics/Molecular Mechanics Simulations on NVIDIA and AMD Graphics Processing Units

View Full Paper
MMMadushanka ManathungaHAHasan Metin AktulgaAGAndreas W. Götz

Key Points

Key points are not available for this paper at this time.

Abstract

quantum mechanics/molecular mechanics (QM/MM) implementation on AMD GPUs. This encompasses the entire Fock matrix build and force calculation in QUICK including one-electron integrals, two-electron repulsion integrals, exchange-correlation quadrature, and linear algebra operations. General performance improvements to the QUICK GPU code are also presented. Benchmarks carried out on NVIDIA V100 and AMD MI100 cards display similar performance on both hardware for standalone HF/DFT calculations with QUICK and QM/MM molecular dynamics simulations with QUICK/AMBER. Furthermore, with respect to the QUICK/AMBER release version 21, significant speedups are observed for QM/MM molecular dynamics simulations. This significantly increases the range of scientific problems that can be addressed with open-source QM/MM software on state-of-the-art computer hardware.

Ask AI
Helpful
Bookmark
Share
View Full Paper

Cite This Study

Manathunga et al. (2023) studied this question.

synapsesocial.com/papers/6a084ac27de338f10b1098a2https://doi.org/10.1021/acs.jcim.2c01505
Ask AI
Helpful
Bookmark
Share
View Full Paper