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October 1, 1986Proceedings of the National Academy of Sciences482 citations

Computer analysis of retroviral pol genes: assignment of enzymatic functions to specific sequences and homologies with nonviral enzymes.

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MJMark S. JohnsonMMMarcella A. McClureDFDa-Fei Feng

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Abstract

A computer analysis of the amino acid sequences from the putative gene products of retroviral pol genes has revealed a 150-residue segment that is homologous with the ribonuclease H of Escherichia coli. The segment occurs at the carboxyl terminus of the region assigned to the 90-kDa reverse transcriptase polypeptide. In contrast, a section nearer the amino terminus of this sequence can be aligned with nonretroviral polymerases. The order of activities in the pol gene is thus: polymerase-ribonuclease-endonuclease. On another note, all retroviral endonuclease sequences contain a consensus zinc-binding "finger." This should not be confused with the well-known zinc requirement of reverse transcriptases.

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Cite This Study

Johnson et al. (1986) studied this question.

synapsesocial.com/papers/6a0dac1ae51d8d6d0c09ca19https://doi.org/10.1073/pnas.83.20.7648
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