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December 21, 201771 citationsOpen Access

NanoPack: visualizing and processing long read sequencing data

WCWouter De CosterSDSvenn D’HertDSDarrin T. Schultz

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Abstract

Abstract Summary: Here we describe NanoPack, a set of tools developed for visualization and processing of long read sequencing data from Oxford Nanopore Technologies and Pacific Biosciences. Availability and Implementation: The NanoPack tools are written in Python3 and released under the GNU GPL3.0 Licence. The source code can be found at https://github.com/wdecoster/nanopack , together with links to separate scripts and their documentation. The scripts are compatible with Linux, Mac OS and the MS Windows 10 subsystem for linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools. Contact: wouter.decoster@molgen.vib-ua.be Supplementary information: Supplementary tables and figures are available at Bioinformatics online.

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Coster et al. (2017) studied this question.

synapsesocial.com/papers/6a0ede1025c30b2cc7f9dab9https://doi.org/10.1101/237180
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